Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PCPG rs75271287 chr10:50541022 C/T 4.65E-6 177 24.5 31.9 25.17 KM Plot
PCPG rs75274818 chr12:56627619 A/G 1.09E-7 177 25.17 27.33 0.8 KM Plot
PCPG rs75297140 chr2:118702123 A/G 1.6E-5 178 25.17 30.93 11.65 KM Plot
PCPG rs7532000 chr1:116713779 A/C 0.000181 178 21.25 30.93 20.13 KM Plot
PCPG rs75328411 chr15:39747995 C/T 0.000421 178 24.7 27.27 26.33 KM Plot
PCPG rs75336382 chr7:33717561 A/G 1.24E-7 176 25.4 25.43 19.87 KM Plot
PCPG rs75352097 chr7:158865712 G/C 0 175 25.4 41.8 3.17 KM Plot
PCPG rs75391217 chr5:171530612 C/G 0.000114 177 25.87 22.3 17.12 KM Plot
PCPG rs75400589 chr17:1430065 T/G 1.14E-5 178 24.7 26.73 25.17 KM Plot
PCPG rs75429875 chr1:227957200 A/C 4.62E-11 176 25.53 21.38 10.3 KM Plot
PCPG rs7543803 chr1:247206885 C/T 0 176 25.67 23.83 2.93 KM Plot
PCPG rs75454187 chr10:131974419 C/T 0 178 25.6 24.23 3.17 KM Plot
PCPG rs75474813 chr3:182628115 G/T 1.06E-5 174 25.87 27.2 11.78 KM Plot
PCPG rs7549531 chr1:247214346 C/G 0 176 25.87 23.83 2.93 KM Plot
PCPG rs75506766 chr7:158702941 G/A 0 177 25.53 23.43 3.17 KM Plot